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Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants.

Identifieur interne : 000266 ( Main/Exploration ); précédent : 000265; suivant : 000267

Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants.

Auteurs : Perrine Portier [France] ; Jacques Pédron [France] ; Géraldine Taghouti [France] ; Marion Fischer-Le Saux [France] ; Emma Caullireau [France] ; Claire Bertrand [France] ; Angélique Laurent [France] ; Khaoula Chawki [France] ; Saïd Oulgazi [France, Maroc] ; Mohedine Moumni [Maroc] ; Didier Andrivon [France] ; Cécile Dutrieux [France] ; Denis Faure [France] ; Valérie Hélias [France] ; Marie-Anne Barny [France]

Source :

RBID : pubmed:31343401

Descripteurs français

English descriptors

Abstract

The Pectobacteriumcarotovorum species corresponds to a complex, including two subspecies with validly published names, two proposed subspecies and two new species, Pectobacterium polaris and Pectobacterium aquaticum. Recent studies suggested that this complex needed revision. We examined the taxonomic status of 144 Pectobacterium strains isolated from a wide range of plant species, various geographical origins and waterways. Sequences of the leuS, dnaX and recA housekeeping genes clustered 114 of these Pectobacterium strains together within a not yet described clade. We sequenced eight strains of this clade and analysed them together with the 102 Pectobacterium genomes available in the NCBI database. Phylogenetic analysis, average nucleotide identity calculation and in silico DNA-DNA hybridization allowed us to differentiate seven clades. This led us to propose the elevation of Pectobacterium carotovorumsubsp. odoriferum to species level as Pectobacteriumodoriferum sp. nov. (type strain CFBP 1878T=LMG 5863T=NCPPB 3839T=ICMP 11533T), the proposal of Pectobacteriumactinidiae sp. nov. (type strain KKH3=LMG 26003 T=KCTC 23131T) and Pectobacteriumbrasiliense sp. nov. (type strain CFBP 6617T= LMG 21371T=NCPPB 4609T), to emend the description of Pectobacterium carotovorum (type strain CFBP 2046T=LMG 2404T=NCPPB 312T=ICMP 5702T), and to propose a novel species, Pectobacterium versatile sp. nov (type strain CFBP6051T= NCPPB 3387T=ICMP 9168T) which includes the strains previously described as 'Candidatus Pectobacterium maceratum'. Phenotypic analysis performed using Biolog GENIII plates on eight strains of P. versatile sp. nov. and related strains completed our analysis.

DOI: 10.1099/ijsem.0.003611
PubMed: 31343401


Affiliations:


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Le document en format XML

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<title xml:lang="en">Elevation of
<i>Pectobacterium carotovorum</i>
subsp.
<i>odoriferum</i>
to species level as
<i>Pectobacterium odoriferum</i>
sp. nov., proposal of
<i>Pectobacterium brasiliense</i>
sp. nov. and
<i>Pectobacterium actinidiae</i>
sp. nov., emended description of
<i>Pectobacterium carotovorum</i>
and description of
<i>Pectobacterium versatile</i>
sp. nov., isolated from streams and symptoms on diverse plants.</title>
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<name sortKey="Bertrand, Claire" sort="Bertrand, Claire" uniqKey="Bertrand C" first="Claire" last="Bertrand">Claire Bertrand</name>
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<name sortKey="Dutrieux, Cecile" sort="Dutrieux, Cecile" uniqKey="Dutrieux C" first="Cécile" last="Dutrieux">Cécile Dutrieux</name>
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<name sortKey="Faure, Denis" sort="Faure, Denis" uniqKey="Faure D" first="Denis" last="Faure">Denis Faure</name>
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<name sortKey="Helias, Valerie" sort="Helias, Valerie" uniqKey="Helias V" first="Valérie" last="Hélias">Valérie Hélias</name>
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<name sortKey="Barny, Marie Anne" sort="Barny, Marie Anne" uniqKey="Barny M" first="Marie-Anne" last="Barny">Marie-Anne Barny</name>
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<title xml:lang="en">Elevation of
<i>Pectobacterium carotovorum</i>
subsp.
<i>odoriferum</i>
to species level as
<i>Pectobacterium odoriferum</i>
sp. nov., proposal of
<i>Pectobacterium brasiliense</i>
sp. nov. and
<i>Pectobacterium actinidiae</i>
sp. nov., emended description of
<i>Pectobacterium carotovorum</i>
and description of
<i>Pectobacterium versatile</i>
sp. nov., isolated from streams and symptoms on diverse plants.</title>
<author>
<name sortKey="Portier, Perrine" sort="Portier, Perrine" uniqKey="Portier P" first="Perrine" last="Portier">Perrine Portier</name>
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<nlm:affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé</wicri:regionArea>
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<name sortKey="Pedron, Jacques" sort="Pedron, Jacques" uniqKey="Pedron J" first="Jacques" last="Pédron">Jacques Pédron</name>
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<name sortKey="Taghouti, Geraldine" sort="Taghouti, Geraldine" uniqKey="Taghouti G" first="Géraldine" last="Taghouti">Géraldine Taghouti</name>
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<name sortKey="Chawki, Khaoula" sort="Chawki, Khaoula" uniqKey="Chawki K" first="Khaoula" last="Chawki">Khaoula Chawki</name>
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<name sortKey="Oulgazi, Said" sort="Oulgazi, Said" uniqKey="Oulgazi S" first="Saïd" last="Oulgazi">Saïd Oulgazi</name>
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<nlm:affiliation>Institute for Integrative Biology of the Cell (I2BC), CEA CNRS Univ. Paris-Sud, University Paris-Saclay, 91198 Gif-sur-Yvette, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
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<country xml:lang="fr">Maroc</country>
<wicri:regionArea>Department of Biology, Faculty of Sciences, Moulay Ismaïl University, BP11201 Zitoune, 50 000, Meknes</wicri:regionArea>
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<name sortKey="Moumni, Mohedine" sort="Moumni, Mohedine" uniqKey="Moumni M" first="Mohedine" last="Moumni">Mohedine Moumni</name>
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<nlm:affiliation>Department of Biology, Faculty of Sciences, Moulay Ismaïl University, BP11201 Zitoune, 50 000, Meknes, Morocco.</nlm:affiliation>
<country xml:lang="fr">Maroc</country>
<wicri:regionArea>Department of Biology, Faculty of Sciences, Moulay Ismaïl University, BP11201 Zitoune, 50 000, Meknes</wicri:regionArea>
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<name sortKey="Andrivon, Didier" sort="Andrivon, Didier" uniqKey="Andrivon D" first="Didier" last="Andrivon">Didier Andrivon</name>
<affiliation wicri:level="3">
<nlm:affiliation>IGEPP, Agrocampus Ouest, INRA, University Rennes 1, 35653 Le Rheu Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>IGEPP, Agrocampus Ouest, INRA, University Rennes 1, 35653 Le Rheu Cedex</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Région Bretagne</region>
<settlement type="city">Le Rheu</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Dutrieux, Cecile" sort="Dutrieux, Cecile" uniqKey="Dutrieux C" first="Cécile" last="Dutrieux">Cécile Dutrieux</name>
<affiliation wicri:level="4">
<nlm:affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Pays de la Loire</region>
<settlement type="city">Beaucouzé</settlement>
</placeName>
<orgName type="university">Université d'Angers</orgName>
</affiliation>
</author>
<author>
<name sortKey="Faure, Denis" sort="Faure, Denis" uniqKey="Faure D" first="Denis" last="Faure">Denis Faure</name>
<affiliation wicri:level="3">
<nlm:affiliation>Institute for Integrative Biology of the Cell (I2BC), CEA CNRS Univ. Paris-Sud, University Paris-Saclay, 91198 Gif-sur-Yvette, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institute for Integrative Biology of the Cell (I2BC), CEA CNRS Univ. Paris-Sud, University Paris-Saclay, 91198 Gif-sur-Yvette</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Gif-sur-Yvette</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Helias, Valerie" sort="Helias, Valerie" uniqKey="Helias V" first="Valérie" last="Hélias">Valérie Hélias</name>
<affiliation wicri:level="3">
<nlm:affiliation>FN3PT/RD3PT, French Federation of Seed Potato Growers, 75008, Paris, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>FN3PT/RD3PT, French Federation of Seed Potato Growers, 75008, Paris</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Barny, Marie Anne" sort="Barny, Marie Anne" uniqKey="Barny M" first="Marie-Anne" last="Barny">Marie-Anne Barny</name>
<affiliation wicri:level="1">
<nlm:affiliation>Sorbonne Université, INRA, Institute of Ecology and Environmental sciences-Paris, 4 place Jussieu, F-75 252 Paris, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Sorbonne Université, INRA, Institute of Ecology and Environmental sciences-Paris, 4 place Jussieu, F-75 252 Paris</wicri:regionArea>
<wicri:noRegion>F-75 252 Paris</wicri:noRegion>
<wicri:noRegion>F-75 252 Paris</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">International journal of systematic and evolutionary microbiology</title>
<idno type="eISSN">1466-5034</idno>
<imprint>
<date when="2019" type="published">2019</date>
</imprint>
</series>
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<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>France (MeSH)</term>
<term>Genes, Bacterial (MeSH)</term>
<term>Lebanon (MeSH)</term>
<term>Morocco (MeSH)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Pectobacterium (classification)</term>
<term>Pectobacterium (isolation & purification)</term>
<term>Pectobacterium carotovorum (classification)</term>
<term>Pectobacterium carotovorum (isolation & purification)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plants (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rivers (microbiology)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>France (MeSH)</term>
<term>Gènes bactériens (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Liban (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Maroc (MeSH)</term>
<term>Pectobacterium (classification)</term>
<term>Pectobacterium (isolement et purification)</term>
<term>Pectobacterium carotovorum (classification)</term>
<term>Pectobacterium carotovorum (isolement et purification)</term>
<term>Phylogenèse (MeSH)</term>
<term>Plantes (microbiologie)</term>
<term>Rivières (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Fatty Acids</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en">
<term>France</term>
<term>Lebanon</term>
<term>Morocco</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Pectobacterium</term>
<term>Pectobacterium carotovorum</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>Acides gras</term>
<term>Pectobacterium</term>
<term>Pectobacterium carotovorum</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Pectobacterium</term>
<term>Pectobacterium carotovorum</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Pectobacterium</term>
<term>Pectobacterium carotovorum</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Maladies des plantes</term>
<term>Plantes</term>
<term>Rivières</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Plant Diseases</term>
<term>Plants</term>
<term>Rivers</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>Genes, Bacterial</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Composition en bases nucléiques</term>
<term>France</term>
<term>Gènes bactériens</term>
<term>Hybridation d'acides nucléiques</term>
<term>Liban</term>
<term>Maroc</term>
<term>Phylogenèse</term>
<term>Techniques de typage bactérien</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr">
<term>France</term>
<term>Liban</term>
<term>Maroc</term>
</keywords>
</textClass>
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<front>
<div type="abstract" xml:lang="en">The
<i>Pectobacteriumcarotovorum</i>
species corresponds to a complex, including two subspecies with validly published names, two proposed subspecies and two new species,
<i>Pectobacterium polaris</i>
and
<i>Pectobacterium aquaticum.</i>
Recent studies suggested that this complex needed revision. We examined the taxonomic status of 144
<i>Pectobacterium</i>
strains isolated from a wide range of plant species, various geographical origins and waterways. Sequences of the
<i>leuS</i>
,
<i>dnaX</i>
and
<i>recA</i>
housekeeping genes clustered 114 of these
<i>Pectobacterium</i>
strains together within a not yet described clade. We sequenced eight strains of this clade and analysed them together with the 102
<i>Pectobacterium</i>
genomes available in the NCBI database. Phylogenetic analysis, average nucleotide identity calculation and
<i>in silico</i>
DNA-DNA hybridization allowed us to differentiate seven clades. This led us to propose the elevation of
<i>Pectobacterium carotovorum</i>
subsp.
<i>odoriferum</i>
to species level as
<i>Pectobacteriumodoriferum</i>
sp. nov. (type strain CFBP 1878
<sup>T</sup>
=LMG 5863
<sup>T</sup>
=NCPPB 3839
<sup>T</sup>
=ICMP 11533
<sup>T</sup>
), the proposal of
<i>Pectobacteriumactinidiae</i>
sp. nov. (type strain KKH3=LMG 26003
<sup>T</sup>
=KCTC 23131
<sup>T</sup>
) and
<i>Pectobacteriumbrasiliense</i>
sp. nov. (type strain CFBP 6617
<sup>T</sup>
= LMG 21371
<sup>T</sup>
=NCPPB 4609
<sup>T</sup>
), to emend the description of
<i>Pectobacterium carotovorum</i>
(type strain CFBP 2046
<sup>T</sup>
=LMG 2404
<sup>T</sup>
=NCPPB 312
<sup>T</sup>
=ICMP 5702
<sup>T</sup>
), and to propose a novel species,
<i>Pectobacterium versatile</i>
sp. nov (type strain CFBP6051
<sup>T</sup>
= NCPPB 3387
<sup>T</sup>
=ICMP 9168
<sup>T</sup>
) which includes the strains previously described as 'Candidatus
<i>Pectobacterium maceratum</i>
'. Phenotypic analysis performed using Biolog GENIII plates on eight strains of
<i>P. versatile</i>
sp. nov. and related strains completed our analysis.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM">
<PMID Version="1">31343401</PMID>
<DateCompleted>
<Year>2019</Year>
<Month>10</Month>
<Day>08</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>10</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Print">
<Journal>
<ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>69</Volume>
<Issue>10</Issue>
<PubDate>
<Year>2019</Year>
<Month>Oct</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Elevation of
<i>Pectobacterium carotovorum</i>
subsp.
<i>odoriferum</i>
to species level as
<i>Pectobacterium odoriferum</i>
sp. nov., proposal of
<i>Pectobacterium brasiliense</i>
sp. nov. and
<i>Pectobacterium actinidiae</i>
sp. nov., emended description of
<i>Pectobacterium carotovorum</i>
and description of
<i>Pectobacterium versatile</i>
sp. nov., isolated from streams and symptoms on diverse plants.</ArticleTitle>
<Pagination>
<MedlinePgn>3207-3216</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.003611</ELocationID>
<Abstract>
<AbstractText>The
<i>Pectobacteriumcarotovorum</i>
species corresponds to a complex, including two subspecies with validly published names, two proposed subspecies and two new species,
<i>Pectobacterium polaris</i>
and
<i>Pectobacterium aquaticum.</i>
Recent studies suggested that this complex needed revision. We examined the taxonomic status of 144
<i>Pectobacterium</i>
strains isolated from a wide range of plant species, various geographical origins and waterways. Sequences of the
<i>leuS</i>
,
<i>dnaX</i>
and
<i>recA</i>
housekeeping genes clustered 114 of these
<i>Pectobacterium</i>
strains together within a not yet described clade. We sequenced eight strains of this clade and analysed them together with the 102
<i>Pectobacterium</i>
genomes available in the NCBI database. Phylogenetic analysis, average nucleotide identity calculation and
<i>in silico</i>
DNA-DNA hybridization allowed us to differentiate seven clades. This led us to propose the elevation of
<i>Pectobacterium carotovorum</i>
subsp.
<i>odoriferum</i>
to species level as
<i>Pectobacteriumodoriferum</i>
sp. nov. (type strain CFBP 1878
<sup>T</sup>
=LMG 5863
<sup>T</sup>
=NCPPB 3839
<sup>T</sup>
=ICMP 11533
<sup>T</sup>
), the proposal of
<i>Pectobacteriumactinidiae</i>
sp. nov. (type strain KKH3=LMG 26003
<sup>T</sup>
=KCTC 23131
<sup>T</sup>
) and
<i>Pectobacteriumbrasiliense</i>
sp. nov. (type strain CFBP 6617
<sup>T</sup>
= LMG 21371
<sup>T</sup>
=NCPPB 4609
<sup>T</sup>
), to emend the description of
<i>Pectobacterium carotovorum</i>
(type strain CFBP 2046
<sup>T</sup>
=LMG 2404
<sup>T</sup>
=NCPPB 312
<sup>T</sup>
=ICMP 5702
<sup>T</sup>
), and to propose a novel species,
<i>Pectobacterium versatile</i>
sp. nov (type strain CFBP6051
<sup>T</sup>
= NCPPB 3387
<sup>T</sup>
=ICMP 9168
<sup>T</sup>
) which includes the strains previously described as 'Candidatus
<i>Pectobacterium maceratum</i>
'. Phenotypic analysis performed using Biolog GENIII plates on eight strains of
<i>P. versatile</i>
sp. nov. and related strains completed our analysis.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Portier</LastName>
<ForeName>Perrine</ForeName>
<Initials>P</Initials>
<AffiliationInfo>
<Affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Pédron</LastName>
<ForeName>Jacques</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>Sorbonne Université, INRA, Institute of Ecology and Environmental sciences-Paris, 4 place Jussieu, F-75 252 Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Taghouti</LastName>
<ForeName>Géraldine</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fischer-Le Saux</LastName>
<ForeName>Marion</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Caullireau</LastName>
<ForeName>Emma</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Bertrand</LastName>
<ForeName>Claire</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Sorbonne Université, INRA, Institute of Ecology and Environmental sciences-Paris, 4 place Jussieu, F-75 252 Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Laurent</LastName>
<ForeName>Angélique</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>FN3PT/RD3PT, French Federation of Seed Potato Growers, 75008, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Chawki</LastName>
<ForeName>Khaoula</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>FN3PT/RD3PT, French Federation of Seed Potato Growers, 75008, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Oulgazi</LastName>
<ForeName>Saïd</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Institute for Integrative Biology of the Cell (I2BC), CEA CNRS Univ. Paris-Sud, University Paris-Saclay, 91198 Gif-sur-Yvette, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Biology, Faculty of Sciences, Moulay Ismaïl University, BP11201 Zitoune, 50 000, Meknes, Morocco.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Moumni</LastName>
<ForeName>Mohedine</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Faculty of Sciences, Moulay Ismaïl University, BP11201 Zitoune, 50 000, Meknes, Morocco.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Andrivon</LastName>
<ForeName>Didier</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>IGEPP, Agrocampus Ouest, INRA, University Rennes 1, 35653 Le Rheu Cedex, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Dutrieux</LastName>
<ForeName>Cécile</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>IRHS, CIRM-CFBP, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 49071, Beaucouzé, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Faure</LastName>
<ForeName>Denis</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>Institute for Integrative Biology of the Cell (I2BC), CEA CNRS Univ. Paris-Sud, University Paris-Saclay, 91198 Gif-sur-Yvette, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hélias</LastName>
<ForeName>Valérie</ForeName>
<Initials>V</Initials>
<AffiliationInfo>
<Affiliation>FN3PT/RD3PT, French Federation of Seed Potato Growers, 75008, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Barny</LastName>
<ForeName>Marie-Anne</ForeName>
<Initials>MA</Initials>
<AffiliationInfo>
<Affiliation>Sorbonne Université, INRA, Institute of Ecology and Environmental sciences-Paris, 4 place Jussieu, F-75 252 Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005602" MajorTopicYN="N" Type="Geographic">France</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D007861" MajorTopicYN="N" Type="Geographic">Lebanon</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009018" MajorTopicYN="N" Type="Geographic">Morocco</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D044043" MajorTopicYN="N">Pectobacterium</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D016973" MajorTopicYN="N">Pectobacterium carotovorum</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010944" MajorTopicYN="N">Plants</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D045483" MajorTopicYN="N">Rivers</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Pectobacterium</Keyword>
<Keyword MajorTopicYN="N">Pectobacterium carotovorum complex</Keyword>
<Keyword MajorTopicYN="N">plants and waterways</Keyword>
</KeywordList>
</MedlineCitation>
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<Month>7</Month>
<Day>26</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2019</Year>
<Month>10</Month>
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<PubMedPubDate PubStatus="entrez">
<Year>2019</Year>
<Month>7</Month>
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<li>Gif-sur-Yvette</li>
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<name sortKey="Caullireau, Emma" sort="Caullireau, Emma" uniqKey="Caullireau E" first="Emma" last="Caullireau">Emma Caullireau</name>
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<name sortKey="Faure, Denis" sort="Faure, Denis" uniqKey="Faure D" first="Denis" last="Faure">Denis Faure</name>
<name sortKey="Fischer Le Saux, Marion" sort="Fischer Le Saux, Marion" uniqKey="Fischer Le Saux M" first="Marion" last="Fischer-Le Saux">Marion Fischer-Le Saux</name>
<name sortKey="Helias, Valerie" sort="Helias, Valerie" uniqKey="Helias V" first="Valérie" last="Hélias">Valérie Hélias</name>
<name sortKey="Laurent, Angelique" sort="Laurent, Angelique" uniqKey="Laurent A" first="Angélique" last="Laurent">Angélique Laurent</name>
<name sortKey="Oulgazi, Said" sort="Oulgazi, Said" uniqKey="Oulgazi S" first="Saïd" last="Oulgazi">Saïd Oulgazi</name>
<name sortKey="Pedron, Jacques" sort="Pedron, Jacques" uniqKey="Pedron J" first="Jacques" last="Pédron">Jacques Pédron</name>
<name sortKey="Taghouti, Geraldine" sort="Taghouti, Geraldine" uniqKey="Taghouti G" first="Géraldine" last="Taghouti">Géraldine Taghouti</name>
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<name sortKey="Oulgazi, Said" sort="Oulgazi, Said" uniqKey="Oulgazi S" first="Saïd" last="Oulgazi">Saïd Oulgazi</name>
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<name sortKey="Moumni, Mohedine" sort="Moumni, Mohedine" uniqKey="Moumni M" first="Mohedine" last="Moumni">Mohedine Moumni</name>
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   |texte=   Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants.
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